Publications

No. Title Main Author Periodical Title No./Date/Frequency Publisher Place Year Pages Identifiers
1. Towards a Semantic Representation for Multi-Scale Finite Element Biosimulation Experiments André Freitas 13th IEEE  International Conference on BioInformatics and BioEngineering (BIBE)  Chania, Greece 2013 http://andrefreitas.org/papers/semantic-representation_bibe_2013.pdf 
2. SIFEM Project: Semantic Infostructure interlinking an open source Finite Element tool and libraries with a model repository for the multi-scale Modelling of the inner-ear Christos Bellos 13th IEEE  International Conference on BioInformatics and BioEngineering (BIBE)  Chania, Greece 2013
3. SIFEM Project: Finite Element Modeling of the Cochlea Velibor Isailovic 13th IEEE  International Conference on BioInformatics and BioEngineering (BIBE)  Chania, Greece 2013
4. Multi-scale 3D finite element modelling of the cochlea: the SIFEM approach A. Bibas 29th Politzer Society Meeting Turkey 2013
5. Semantic Infostructure Finite Element Modelling (SIFEM) of the Cochlea A. Bibas 17th Panhellenic Otolaryngology Conference Greece 2013
6. Wave finite element analysis of an active cochlear model Guangjian Ni and Stephen Elliott 21st International Congress on Acoustics (ICA) Montreal, Canada 2013
7. Waves in a Three-dimensional Model of the Cochlea Guangjian Ni and Stephen Elliott 11th International Conference on Recent Advances in Structural Dynamics (RASD) Pisa, Italy 2013
8. Skull vibration during bone conduction hearing Stefan Stenfelt Congress on Sound and Vibration (ICSV) Bangkok, Thailand 2013
9. Correlation between intracranial pressure and skull vibration in bone conduction of cadaveric human whole heads Röösli, C, Sim, JH, Gehrig, R, Fausch, BC, Stenfelt, S, Huber, AM 36th MidWinter Research Meeting of Association for Research in Otolaryngology Maryland, USA 2013
10. Transmission of bone conducted sound - correlation between hearing perception and cochlear vibration Eeg-Olofsson, M., Stenfelt, S., Taghavi, H., Reinfeldt, S., Håkansson, B., Tengstrand, T. Finizia, C Hearing Research Vol 306 2013
11. Towards a Semantic Web Platform for Finite Element Simulations Andre Freitas, Kartik Asooja, Swapnil Soni, Marggie Jones, Panagiotis Hasapis, Ratnesh Sahay 11th European Semantic Web Conference (ESWC) Crete, Greece 2014
12. Effect of basilar membrane radial velocity profile on fluid coupling in the cochlea. Ni, G. The Journal of the Acoustical Society of America, 2013
13. Reconstruction of Cochlea Based on Micro-CT and Histological Images of the Human Inner Ear. Bellos, C. BioMed Research International, 2014
14. A Clinically Oriented Introduction and Review on Finite Element Models of the Human Cochlea. Kikidis, D. BioMed Research International, 2014
15. A Three-Dimensional Finite-Element Model of a Human Dry Skull for Bone-Conduction Hearing. Kim, N. BioMed Research International, 2014
16. Review: Modelling cochlear mechanics. Ni, G. BioMed Research International, 2014
17. Mechanical and Electro–Mechanical Box Cochlea Model. Nikolic, M. Journal of the Serbian Society for Computational Mechanics, 2014
18. Inner ear contribution to bone conduction hearing in the human. Stenfelt, S. Hearing Research, 2014
19. Comparing methods of modeling near field fluid coupling in the cochlea. Ni, G. The Journal of the Acoustical Society of America, 2015
20. Model predictions for bone conduction perception in the human, Stenfelt, S. Hearing Research, 2015
21. Finite Element Model of the Active Organ of Corti, Ni, G. Journal of the Royal Society Interface. 2016
22. Cochlear boundary motion during bone conduction stimulation: Implications for inertial and compressional excitation of the cochlea, Stenfelt, S. In Mechanics of Hearing: Protein to Perception, 2015
23. Simulation of bone-conducted sound transmission in a three-dimensional finite-element model of a human skull, Chang, Y. In Mechanics of Hearing: Protein to Perception, 2015
24. A possible third window for bone conducted hearing: Cochlear aqueduct vs vestibular aqueduct, Kim, N. In Mechanics of Hearing: Protein to Perception, 2015
25. Near Field Fluid Coupling between Internal Motion of the Organ of Corti and the Basilar Membrane, Stephen J. In Mechanics of Hearing: Protein to Perception, 2015
26. Influence of Young's moduli in 3D fluid-structure coupled models of the human cochlea, F Böhnke, S. In Mechanics of Hearing: Protein to Perception, 2015
27. Modelling Cochlear Micromechanics, Guangjian Ni, Stephen J. In Proceedings of the 21st International Congress on Sound and Vibration: In Depth Sound and Vibration Research, 2014
28. Correlation between intracranial pressure and skull vibration in bone conduction of cadaveric human whole heads Röösli, C, Sim, JH, Gehrig, R, Fausch, BC, Stenfelt, S, Huber, AM 36th MidWinter Research Meeting of Association for Research in Otolaryngology Maryland 16-20 February 2013
29. Wave finite element analysis of an active cochlear model Guangjian Ni and Stephen Elliott 21st International Congress on Acoustics (ICA) Montreal 2-7 June 2013
30. Waves in a Three-dimensional Model of the Cochlea Guangjian Ni and Stephen Elliott 11th International Conference on Recent Advances in Structural Dynamics (RASD) Italy 1-3 July 2013
31. Skull vibration during bone conduction hearing Stefan Stenfelt 20th International Congress on Sound and Vibration (ICSV) Thailand 7-11 July 2013
32. Semantic Infostructure Finite Element Modelling (SIFEM) of the Cochlea Bibas, A. 17th Panhellenic Otolaryngology Conference Greece 10-13 October 2013
33. Towards a Semantic Representation for Multi-Scale Finite Element Biosimulation Experiments André Freitas 13th IEEE International Conference on BioInformatics and BioEngineering (BIBE) Greece 10-13 November 2013
34. SIFEM Project: Semantic Infostructure interlinking an open source Finite Element tool and libraries with a model repository for the multi-scale Modelling of the inner-ear Christos Bellos 13th IEEE International Conference on BioInformatics and BioEngineering (BIBE) Greece 10-13 November 2013
35. SIFEM Project: Finite Element Modeling of the Cochlea Velibor Isailovic, Milica Obradovic, Dalibor Nikolic, Igor Saveljic and Nenad Filipovic 13th IEEE International Conference on BioInformatics and BioEngineering (BIBE) Greece 10-13 November 2013
36. Multi-scale 3D finite element modelling of the cochlea: the SIFEM approach Bibas, A. 29th Politzer Society Meeting Turkey 14-17 November 2013
37. A Distribution of intra-cranial sound pressure during bone conduction stimulation Sim, JH, Röösli, C, Gerig, R, Dalbert, A, Fausch, C, Stenfelt, S, Huber 37th MidWinter Research Meeting of Association for Research in Otolaryngology USA February 2014
38. and simulations Stenfelt, S, Mechanisms of bone conduction hearing: Experiments, models 37th MidWinter Research Meeting of Association for Research in Otolaryngology USA February 2014
39. Wave propagation in the skull bone during bone conduction stimulation Röösli, C, Sim, JH, Gerig, R, Dalbert, A, Fausch, C, Stenfelt, S, Huber, A 37th MidWinter Research Meeting of Association for Research in Otolaryngology USA February 2014
40. 11th European Semantic Web Conference (ESWC) Andre Freitas, Kartik Asooja, Swapnil Soni, Marggie Jones, Panagiotis Hasapis, and Ratnesh Sahay, Towards a Semantic Web Platform for Finite Element Simulations Springer LNCS Notes Greece May 2014
41. Cochlea Models Validation Dimitris Kikidis 40th Panhellenic Medical Congress Greece May 2014
42. Modelling Motions within the Organ of Corti Guangjian Ni, Stephen Elliott and Johannes Baumgart 12th Mechanics of Hearing Greece June 2014
43. Near Field Fluid Coupling between Internal Motion of the Organ of Corti and the Basilar Membrane Stephen J. Elliott and Guangjian Ni 12th Mechanics of Hearing Greece June 2014
44. A Tapered Box Model of the Cochlea Luyang Sun, Guangjian Ni and Stephen Elliott 12th Mechanics of Hearing Greece June 2014
45. Prediction of the inertial effects due to bone conduction in a 2D box model of the cochlea Alice Halpin, Stephen Elliott and Guangjian Ni 12th Mechanics of Hearing Greece June 2014
46. Model Based Prediction of the existence of Spontaneous Cochlea Microphonic M. Ayat and P.D. Teal 12th Mechanics of Hearing Greece June 2014
47. Cochlea Microphonic Broad Tuning Curves M. Ayat and P.D. Teal 12th Mechanics of Hearing Greece June 2014
48. Cochlear boundary motion during bone conduction stimulation: Implications for inertial and compressional excitation of the cochlea Stenfelt, S 12th Mechanics of Hearing Greece June 2014
49. Simulation of bone-conducted sound transmission in a three-dimensional finite-element model of a human skull Chang, Y, Kim, N, and Stenfelt, S 12th Mechanics of Hearing Greece June 2014
50. A Possible third window for bone conducted hearing: Cochlear aqueduct vs. vestibular aqueduct Kim, N, and Stenfelt, S 12th Mechanics of Hearing Greece June 2014
51. Influence of Young's moduli in 3D fluid-structure coupled models of the human cochlea F. Böhnke, S. Semmelbauer and T. Marquardt 12th Mechanics of Hearing Greece June 2014
52. Finite Element Cochlea Box Model – Mechanical and Electrical Analysis Milica Nikolic, Paul Teal, Velibor Isailovic, Nenad Filipovic 12th Mechanics of Hearing Greece June 2014
53. Finite Element Coiled Cochlea Model Velibor Isailovic, Milica Nikolic, Zarko Milosevic, Igor Saveljic, Dalibor Nikolic, Milos Radovic, Nenad Filipovic 12th Mechanics of Hearing Greece June 2014
54. Development of the Software Tool for Generation and Visualization of the Finite Element Head Model with Bone Conduction Sounds Dalibor Nikolic, Zarko Milosevic, Igor Saveljic and Nenad Filipovic 12th Mechanics of Hearing Greece June 2014
55. Modelling of the 3D Coiled Cochlea Velibor Isailovic, Milica Nikolic, Igor Saveljic, Dalibor Nikolic, Nenad Filipovic IEEE – EMBS International Conferences on Biomedical and Health Informatics Spain June 2014
56. Modelling Cochlear Micromechanics Guangjian Ni, Stephen J. Elliott and Johannes Baumgart 21st International Congress on Sound and Vibration (ICSV) China July 2014
57. Prediction of Mechanical Effect Due to a Cochlear implant Guangjian Ni and Stephen J. Elliott 51st Inner Ear Biology Workshop (IBE) UK September 2014
58. S. Stenfelt The Annual National Congress of the Belgian ORL Society Belgium 2014
59. A Semantic Web Platform for Improving the Automation and Reproducibility of Finite Element Bio-simulation André Freitas, Kartik Asooja, Joao Jares, Stefan Decker and Ratnesh Sahay Semantic Web Applications and Tools for the Life Sciences (SWAT4LS) Germany December 2014
60. Finite Element Model of Cochlea – Air Conduction and Bone Conduction Velibor Isailović, Milica Nikolić, Žarko Milosević, Igor Saveljić, Dalibor Nikolić, Miloš Radović and Nenad Filipović ICIST 2015 5th International Conference on Information Society and Technology Serbia March 2015
61. Musicians Hearing Disorders Katerina Vardonikolaki Noise Conference (HELINA-IEMA) Greece 20 May 2015
62. A. Clinical Validation of A Finite Element Model of the Cochlea Using A Fast method for Estimating Psychoacoustic Tuning Curves Vardonikolaki, A., Bizopoulos, P., Markatos, N., Milller, C., Koutsouris, D., Kikidis, D., Bibas 3rd Congress of European ORL-HNS Prague 7 - 11 June 2015
63. Finite Element Cochlea Model: Preliminary Validation Results Miller, C., Kikidis, D., Isailovic, V., Filipovic, N., Marquardt, T., Bibas, A. 3rd Congress of European ORL-HNS Prague 7 - 11 June 2015
64. The effect of damping on the travelling wave pattern in a 3D cochlear FE model Torsten Marquardt, Daniel Zackon, Velibor Isailovic The Auditory Model Workshop Germany 12-13 June 2015
65. Finite element modelling of micromechanics of the human and guinea pig cochlea Guangjian Ni and Stephen Elliott The Auditory Model Workshop Germany 12-13 June 2015
66. Tapered Box Model of the Cochlea: Air and Bone Conduction V. M. Isailovic, M. M. Nikolic, N. D. Filipovic Fifth Serbian (30th YU) Congress on Theoretical and Applied Mechanics Serbia 15 - 17 June 2015
67. The Effects of an Implant on the Mechanics of the Cochlea Stephen J. Elliott Applied Microanatomy and Ultrastructure of the Human Cochlea - Implications for cochlear implantation Sweden June 2015
68. S. Model predictions of bone conduction hearing in the human Stenfelt 7th International Symposium on Middle Ear Mechanics in Research and Otology Denmark 1-5 July 2015
69. S. Estimation of transcranial attenuation and time delay of bone-conducted sound by a three-dimensional finite-element model of the human head Chang, Y, Kim, N, Stenfelt 7th International Symposium on Middle Ear Mechanics in Research and Otology Denmark 1-5 July 2015
70. S. Quantification of the contribution of fluid inertia and bone compression for the hearing of bone conducted sound Kim, N, Chang, Y, Stenfelt 7th International Symposium on Middle Ear Mechanics in Research and Otology Denmark 1-5 July 2015
71. The effect of the “third window” on the response of a 2D model of the cochlea Alice Halpin, Stephen Elliott and Guangjian Ni The 22nd International Congress on Sound and Vibration Italy 12-16 July 2015
72. Fitting pole-zero Micromechanical models to coupled cochlear responses by direct optimization Luyang Sun, Stephen Elliott and Guangjian Ni The 22nd International Congress on Sound and Vibration Italy 12-16 July 2015
73. Modelling the effect of low frequency bias tones on spontatneous otoacoustic emissions Dario Vignali, Stephen Elliott and Ben Lineton The 22nd International Congress on Sound and Vibration Italy 12-16 July 2015
74. Dimitrios Koutsouris and Dimitrios I. Fotiadis Ioannis F. Spiridon, Antonis I. Sakellarios, George A. Rigas, Anastasios Tagaris, Christos V. Bellos, Athanasios Bibas, Frank Böhnke, Dimitra Iliopoulou Effect of modeling parameters on the frequency response of the middle ear by means of finite element analysis. 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2015) Italy 25-29 August 2015
75. Usage of cochlea coiled model and model of the organ of Corti in modeling of the cochlear implants V. Isailovic, M. Nikolic, Z. Milosevic, I. Saveljic, D. Nikolic, M. Radovic, and N. Filipović ESAO 2015 Belgium 2-5 September 2015
76. Differential effects of fluid viscosity and solid damping on the simulated travelling wave in a 3D cochlear FE model Daniel Zackon and Torsten Marquardt Basic Auditory Science Meeting of the British Society of Audiology UK 3-4 September 2015
77. Finite Element Modelling of the Human Cochlea Paul Teal Celebration and Showcase of Hearing and Vestibular Research in New Zealand New Zealand 10-12 September 2015
78. and Semantic Integration: A Promising Approach to Solving Unmet Medical Needs (BDM2I2015) co-located with The 14th International Semantic Web Conference (ISWC 2015) Muntazir Mehdi, Aftab Iqbal, Yasar Khan, Stefan Decker, Ratnesh Sahay, (2015) Detecting Inner-Ear Anatomical and Clinical Datasets in the Linked Open Data (LOD) Cloud. Proceedings of International Workshop on Biomedical Data Mining, Modeling 11th October United States 2015
79. (2015) A linked data platform for finite element biosimulations. Proceedings of the 11th International Conference on Semantic Systems Muntazir Mehdi, Yasar Khan, André Freitas, Joao Jares, Stefan Decker, Ratnesh Sahay SEMANTICS 2015 Austria 15-17 September 2015
80. SIFEM project Sebastian Semmelbauer and Frank Böhnke 60th International Congress of Hearing Aid Acousticians Germany 14th - 16th October 2015
81. Clinical Validation of a cochlear model Miller C., Kikidis D., Isailovic V., Filipovic N., Marquardt T., Bibas A. 18th Panhellenic Congress of Otololaryngology Greece October 15-18
82. et al. Using of finite element method for modeling of active cochlea Isailovic, V.M. Nikolic, M.M. Nikolic, D.D. 15th International conference on Bioinformatics and Bioengineering Serbia 2-4 November 2015
83. Electro-mechanical cochlea model Nikolic, M.M., Isailovic, V.M., Teal, P., et al. 15th International conference on Bioinformatics and Bioengineering Serbia 2-4 November 2015
84. A computational study of ligaments effect in middle ear chain anatomy behaviour Nikolaos S. Tachos, Antonis I. Sakellarios, George A. Rigas, Ioannis Spiridon, Athanasios Bibas, Frank Böhnke and Dimitrios I. Fotiadis 15th International Conference on Bioinformatics and Bioengineering (BIBE2015) Serbia 2-4 November 2015
85. Change of Cochlear Micromechanics due to Different Types of Hearing Loss Guangjian Ni and Stephen Elliott 15th International Conference on Bioinformatics and Bioengineering (BIBE2015) Serbia 2-4 November 2015
86. (2015) Extending inner-ear anatomical concepts in the Foundational Model of Anatomy (FMA) ontology. 15th IEEE International Conference on Bioinformatics and Bioengineering Yasar Khan, Muntazir Mehdi, Alokkumar Jha, Saleem Raza, André Freitas, Marggie Jones, Ratnesh Sahay BIBE 2015 Serbia 2-4 November 2015
87. Inner Ear Boundary Motion During Bone Conduction Stimulation – Indications for Inner Ear Compression and Fluid Inertia Stenfelt, S, Kim, N 15th International conference on Bioinformatics and Bioengineering (BIBE2015) Serbia 2-4 November 2015
88. Clinical Applications of Cochlear Modelling Stephen Elliott and Guangjian Ni The Future of Auditory Implants Conference UK 6 November 2015
89. Panagiotis Hasapis Muntazir Mehdi, Yasar Khan, Andre Freitas, Joao Bosco Jares, Saleem Raza and Ratnesh Sahay. A Linked Data Visualiser for Finite Element Biosimulations. In proceedings of the tenth IEEE International Conference on Semantic Computing USA 2016
90. Athanasios Bibas. A Finite Element Study of the effects of the ossicular ligaments on middle ear transfer function Nikolaos S. Tachos, Antonis I. Sakellarios, George A. Rigas, Ioannis Spiridon, Frank Böhnke, Dimitrios I. Fotiadis A ARO 39th Meeting USA 20-24 February 2016
91. F. Böhnke and D.I. Fotiadis (2016) 3D reconstruction of cochlea geometries using human microCT images A.I. Sakellarios, N.S. Tachos, G. Rigas, T. Bibas, G. Ni MEDICON 2016 Cyprus 31 March – 2 April 2016
92. Stephen J. Elliott and Ben Lineton. Modelling nonlinear interactions between spontaneous otoacoustic emissions and external stimuli Dario Vignali ICSV 2016 Greece 10-16 July
93. A computational study of ligaments effect in middle ear chain anatomy behaviour Nikolaos S Tachos, Antonis I. Sakellarios, George A. Rigas, Ioannis Spiridon, Athanasios Bibas, Frank Böhnke and Dimitrios I. Fotiadis 15th International Conference on Bioinformatics and Bioengineering (BIBE2015) Serbia 2-4 November 2015
94. Change of Cochlear Micromechanics due to Different Types of Hearing Loss Guangjian Ni and Stephen Elliott 15th International Conference on Bioinformatics and Bioengineering (BIBE2015) Serbia 2-4 November 2015
95. Inner Ear Boundary Motion During Bone Conduction Stimulation – Indications for Inner Ear Compression and Fluid Inertia Stenfelt, S, Kim, N 15th International conference on Bioinformatics and Bioengineering Serbia 2-4 November 2015
96. (2015) Extending inner-ear anatomical concepts in the Foundational Model of Anatomy (FMA) ontology. 15th IEEE International Conference on Bioinformatics and Bioengineering Yasar Khan, Muntazir Mehdi, Alokkumar Jha, Saleem Raza, André Freitas, Marggie Jones, Ratnesh Sahay BIBE 2015 Serbia 2-4 November 2015
97. Using of finite element method for modeling of active cochlea Isailovic, V.M. Nikolic, M.M. Nikolic, D.D 15th International conference on Bioinformatics and Bioengineering Serbia 2-4 November 2015
98. Electro-mechanical cochlea model Nikolic, M.M., Isailovic, V.M., Teal, P., et al. 15th International conference on Bioinformatics and Bioengineering  Serbia 2-4 November 2015
99. Detecting Inner-Ear Anatomical and Clinical Datasets in the Linked Open Data (LOD) Cloud Muntazir Mehdi, Aftab Iqbal, Yasar Khan, Stefan Decker, Ratnesh Sahay Proceedings of International Workshop on Biomedical Data Mining Modeling and Semantic Integration: A Promising Approach to Solving Unmet Medical Needs (BDM2I2015) co-located with The 14th International Semantic Web Conference (ISWC 2015) United States October 11th 2015
100. 15th IEEE International Conference on Bioinformatics and Bioengineering Yasar Khan, Muntazir Mehdi, Alokkumar Jha, Saleem Raza, André Freitas, Marggie Jones, Ratnesh Sahay, Extending inner-ear anatomical concepts in the Foundational Model of Anatomy (FMA) ontology BIBE 2015 Serbia November 2-4 2015
101. Proceedings of the 11th International Conference on Semantic Systems Muntazir Mehdi, Yasar Khan, André Freitas, Joao Jares, Stefan Decker, Ratnesh Sahay, A linked data platform for finite element biosimulations SEMANTICS 2015 Austria September 15-17 2015
102. A Linked Data Visualiser for Finite Element Biosimulations Muntazir Mehdi, Yasar Khan, Andre Freitas, Joao Bosco Jares, Saleem Raza, Panagiotis Hasapis, and Ratnesh Sahay In proceedings of the tenth IEEE International Conference on Semantic Computing USA 2016